Midford, Peter E. : rechercher sur Z-Library

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Articles (38)
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The BioCyc collection of microbial genomes and metabolic pathways

Karp, Peter D., Billington, Richard, Caspi, Ron, Fulcher, Carol A., Latendresse, Mario, Kothari, Anamika, Keseler, Ingrid M., Krummenacker, Markus, Midford, Peter E., Ong, Quang, Ong, Wai Kit, Paley,

Journal:

Briefings in Bioinformatics

Année:

2017

Langue:

english

Fichier:

PDF, 693 KB

english, 2017

The EcoCyc Database

Karp, Peter D., Ong, Wai Kit, Paley, Suzanne, Billington, Richard, Caspi, Ron, Fulcher, Carol, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Midford, Peter E., Subhraveti, Pallavi, Gama-

Journal:

EcoSal Plus

Année:

2018

Langue:

english

Fichier:

PDF, 59 KB

english, 2018

A Comparison of Microbial Genome Web Portals

Karp, Peter D., Ivanova, Natalia, Krummenacker, Markus, Kyrpides, Nikos, Latendresse, Mario, Midford, Peter, Ong, Wai Kit, Paley, Suzanne, Seshadri, Rekha

Journal:

Frontiers in Microbiology

Année:

2019

Fichier:

PDF, 700 KB

2019

Using Pathway Covering to Explore Connections among Metabolites

Midford, Peter E., Latendresse, Mario, O’Maille, Paul E., Karp, Peter D.

Journal:

Metabolites

Année:

2019

Langue:

english

Fichier:

PDF, 1.50 MB

english, 2019

Robots aren't the only physical models

Midford, Peter E.

Journal:

Behavioral and Brain Sciences

Année:

2001

Langue:

english

Fichier:

PDF, 781 KB

english, 2001

Taxonomic Weighting Improves the Accuracy of a Gap-Filling Algorithm for Metabolic Models

Ong, Wai Kit, Midford, Peter E, Karp, Peter D, Cowen, Lenore

Journal:

Bioinformatics

Année:

2019

Fichier:

PDF, 683 KB

2019

Social learning of a novel foraging patch in families of free-living Florida scrub-jays

Peter E. Midford, Jack P. Hailman, Glen E. Woolfenden

Journal:

Animal Behaviour

Année:

2000

Langue:

english

Fichier:

PDF, 139 KB

english, 2000

Linking of Digital Images to Phylogenetic Data Matrices Using a Morphological Ontology

Ramírez, Martín J., Coddington, Jonathan A., Maddison, Wayne P., Midford, Peter E., Prendini, Lorenzo, Miller, Jeremy, Griswold, Charles E., Hormiga, Gustavo, Sierwald, Petra, Scharff, Nikolaj, Benjam

Journal:

Systematic Biology

Année:

2007

Langue:

english

Fichier:

PDF, 1.97 MB

english, 2007

Exploring power and parameter estimation of the BiSSE method for analyzing species diversification

Matthew P Davis, Peter E Midford, Wayne Maddison

Journal:

BMC Evolutionary Biology

Année:

2013

Langue:

english

Fichier:

PDF, 384 KB

english, 2013

The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes

Midford, Peter E, Dececchi, Thomas, Balhoff, James P, Dahdul, Wasila M, Ibrahim, Nizar, Lapp, Hilmar, Lundberg, John G, Mabee, Paula M, Sereno, Paul C, Westerfield, Monte, Vision, Todd J, Blackburn, D

Journal:

Journal of Biomedical Semantics

Année:

2013

Langue:

english

Fichier:

PDF, 193 KB

english, 2013

Patterns in root traits of woody species hosting arbuscular and ectomycorrhizas: implications for the evolution of belowground strategies

Comas, Louise H., Callahan, Hilary S., Midford, Peter E.

Journal:

Ecology and Evolution

Année:

2014

Langue:

english

Fichier:

PDF, 688 KB

english, 2014

An Introduction to Phylogenetically Based Statistical Methods, with a New Method for Confidence Intervals on Ancestral Values

GARLAND, THEODORE, MIDFORD, PETER E., IVES, ANTHONY R.

Journal:

Integrative and Comparative Biology

Année:

1999

Langue:

english

Fichier:

PDF, 1.30 MB

english, 1999

Estimating a Binary Character's Effect on Speciation and Extinction

Maddison, Wayne, Midford, Peter, Otto, Sarah

Journal:

Systematic Biology

Année:

2007

Langue:

english

Fichier:

PDF, 1.31 MB

english, 2007

Within-Species Variation and Measurement Error in Phylogenetic Comparative Methods

Ives, Anthony R., Midford, Peter E., Garland, Theodore

Journal:

Systematic Biology

Année:

2007

Langue:

english

Fichier:

PDF, 2.88 MB

english, 2007

Cultural transmission is more than cultural learning

Midford, Peter

Journal:

Behavioral and Brain Sciences

Année:

1993

Langue:

english

Fichier:

PDF, 7.71 MB

english, 1993

Within-Species Variation and Measurement Error in Phylogenetic Comparative Methods

Anthony R. Ives, Peter E. Midford and Theodore Garland Jr.

Journal:

Systematic Biology

Année:

2007

Langue:

english

Fichier:

PDF, 3.52 MB

english, 2007

An Introduction to Phylogenetically Based Statistical Methods, with a New Method for Confidence Intervals on Ancestral Values

Theodore Garland, Jr., Peter E. Midford and Anthony R. Ives

Journal:

American Zoologist

Année:

1999

Langue:

english

Fichier:

PDF, 723 KB

english, 1999

Linking of Digital Images to Phylogenetic Data Matrices Using a Morphological Ontology

Martín J. Ramírez, Jonathan A. Coddington, Wayne P. Maddison, Peter E. Midford, Lorenzo Prendini, Jeremy Miller, Charles E. Griswold, Gustavo Hormiga, Petra Sierwald, Nikolaj Scharff, Suresh P. Benjam

Journal:

Systematic Biology

Année:

2007

Langue:

english

Fichier:

PDF, 2.71 MB

english, 2007

NeXML: Rich, Extensible, and Verifiable Representation of Comparative Data and Metadata

Rutger A. Vos, James P. Balhoff, Jason A. Caravas, Mark T. Holder, Hilmar Lapp, Wayne P. Maddison, Peter E. Midford, Anurag Priyam, Jeet Sukumaran, Xuhua Xia and Arlin Stoltzfus

Journal:

Systematic Biology

Année:

2012

Langue:

english

Fichier:

PDF, 2.81 MB

english, 2012

The Teleost Anatomy Ontology: Anatomical Representation for the Genomics Age

Wasila M. Dahdul, John G. Lundberg, Peter E. Midford, James P. Balhoff, Hilmar Lapp, Todd J. Vision, Melissa A. Haendel, Monte Westerfield, Paula M. Mabee and Elizabeth Jockusch

Journal:

Systematic Biology

Année:

2010

Langue:

english

Fichier:

PDF, 2.79 MB

english, 2010

Estimating a Binary Character's Effect on Speciation and Extinction

Wayne P. Maddison, Peter E. Midford and Sarah P. Otto

Journal:

Systematic Biology

Année:

2007

Langue:

english

Fichier:

PDF, 1.56 MB

english, 2007

The MetaCyc database of metabolic pathways and enzymes

Caspi, Ron, Billington, Richard, Fulcher, Carol A, Keseler, Ingrid M, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Midford, Peter E, Ong, Quang, Ong, Wai Kit, Paley, Suzanne, Subhraveti

Journal:

Nucleic Acids Research

Année:

2018

Langue:

english

Fichier:

PDF, 1.45 MB

english, 2018

Phenex: Ontological Annotation of Phenotypic Diversity

Balhoff, James P., Dahdul, Wasila M., Kothari, Cartik R., Lapp, Hilmar, Lundberg, John G., Mabee, Paula, Midford, Peter E., Westerfield, Monte, Vision, Todd J., Poon, Art F. Y.

Journal:

PLoS ONE

Année:

2010

Langue:

english

Fichier:

PDF, 884 KB

english, 2010

Evolutionary Characters, Phenotypes and Ontologies: Curating Data from the Systematic Biology Literature

Dahdul, Wasila M., Balhoff, James P., Engeman, Jeffrey, Grande, Terry, Hilton, Eric J., Kothari, Cartik, Lapp, Hilmar, Lundberg, John G., Midford, Peter E., Vision, Todd J., Westerfield, Monte, Mabee,

Journal:

PLoS ONE

Année:

2010

Langue:

english

Fichier:

PDF, 370 KB

english, 2010

Towards Next Generation Rubrics: An Automated Assignment Feedback System

Nathawitharana, Nilupulee, Huang, Qing, Ong, Kok-Leong, Vitartas, Peter, Jayaratne, Madhura, Alahakoon, Damminda, Midford, Sarah, Michalewicz, Aleks, Sullivan Mort, Gillian, Ahmed, Tanvir

Journal:

Australasian Journal of Information Systems

Année:

2017

Langue:

english

Fichier:

PDF, 738 KB

english, 2017

Phenoscape: Ontologies for Large Multi-species Phenotype Datasets

Midford, Peter, Mabee, Paula, Vision, Todd, Lapp, Hilmar, Balhoff, Jim, Dahdul, Wasila, Kothari, Cartik, Lundberg, John, Westerfield, Monte

Journal:

Bioentrepreneur

Année:

2009

Langue:

english

Fichier:

PDF, 1.38 MB

english, 2009

Phenex: Ontological Annotation of Phenotypic Diversity

Balhoff, James, Dahdul, Wasila, Kothari, Cartik, Lapp, Hilmar, Lundberg, John, Mabee, Paula, Midford, Peter, Westerfield, Monte, Vision, Todd

Journal:

Nature Precedings

Année:

2009

Langue:

english

Fichier:

PDF, 1.50 MB

english, 2009

Phenex: Ontological Annotation of Phenotypic Diversity

Balhoff, James, Dahdul, Wasila, Kothari, Cartik, Lapp, Hilmar, Lundberg, John, Mabee, Paula, Midford, Peter, Westerfield, Monte, Vision, Todd

Journal:

Bioentrepreneur

Année:

2010

Langue:

english

Fichier:

PDF, 40 KB

english, 2010

The Teleost Taxonomy Ontology

Midford, Peter, Balhoff, James, Dahdul, Wasila, Kothari, Cartik, Lapp, Hilmar, Lundberg, John, Mabee, Paula, Vision, Todd, Westerfield, Monte

Journal:

Bioentrepreneur

Année:

2010

Langue:

english

Fichier:

PDF, 96 KB

english, 2010

Phylontal: Using Phylogenies to Align Phenotype Ontologies

Midford, Peter

Journal:

Bioentrepreneur

Année:

2010

Langue:

english

Fichier:

PDF, 787 KB

english, 2010

Phenex: Ontological Annotation of Phenotypic Diversity

Balhoff, James, Dahdul, Wasila, Kothari, Cartik, Lapp, Hilmar, Lundberg, John, Mabee, Paula, Midford, Peter, Westerfield, Monte, Vision, Todd

Journal:

Nature Precedings

Année:

2009

Fichier:

PDF, 1.50 MB

2009

Phenoscape: Ontologies for Large Multi-species Phenotype Datasets

Midford, Peter, Mabee, Paula, Vision, Todd, Lapp, Hilmar, Balhoff, Jim, Dahdul, Wasila, Kothari, Cartik, Lundberg, John, Westerfield, Monte

Journal:

Bioentrepreneur

Année:

2009

Fichier:

PDF, 1.38 MB

2009

Phenex: Ontological Annotation of Phenotypic Diversity

Balhoff, James, Dahdul, Wasila, Kothari, Cartik, Lapp, Hilmar, Lundberg, John, Mabee, Paula, Midford, Peter, Westerfield, Monte, Vision, Todd

Journal:

Bioentrepreneur

Année:

2010

Fichier:

PDF, 40 KB

2010

The Teleost Taxonomy Ontology

Midford, Peter, Balhoff, James, Dahdul, Wasila, Kothari, Cartik, Lapp, Hilmar, Lundberg, John, Mabee, Paula, Vision, Todd, Westerfield, Monte

Journal:

Bioentrepreneur

Année:

2010

Fichier:

PDF, 96 KB

2010

Phylontal: Using Phylogenies to Align Phenotype Ontologies

Midford, Peter

Journal:

Bioentrepreneur

Année:

2010

Fichier:

PDF, 787 KB

2010

The MetaCyc database of metabolic pathways and enzymes—a 2019 update

Caspi, Ron, Billington, Richard, Keseler, Ingrid M, Kothari, Anamika, Krummenacker, Markus, Midford, Peter E, Ong, Wai Kit, Paley, Suzanne, Subhraveti, Pallavi, Karp, Peter D

Journal:

Nucleic Acids Research

Année:

2019

Langue:

english

Fichier:

PDF, 1.09 MB

english, 2019

Taxonomic Weighting Improves the Accuracy of a Gap-Filling Algorithm for Metabolic Models

Ong, Wai Kit, Midford, Peter E, Karp, Peter D, Cowen, Lenore

Journal:

Bioinformatics

Année:

2019

Langue:

english

Fichier:

PDF, 683 KB

english, 2019

Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology

Karp, Peter D, Midford, Peter E, Billington, Richard, Kothari, Anamika, Krummenacker, Markus, Latendresse, Mario, Ong, Wai Kit, Subhraveti, Pallavi, Caspi, Ron, Fulcher, Carol, Keseler, Ingrid M, Pale

Journal:

Briefings in Bioinformatics

Année:

2019

Fichier:

PDF, 2.36 MB

2019